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Ecological Genomics Institute

2011 Publications

Civetta, A., J.M. Eirin-Lopez, R. Kulathinal, J.L. Marshall. 2011. The evolution of sex-related traits and genes.International Journal of Evolutionary Biology, Article ID 807218.

Darby, B.J., Jones, K.L., Wheeler, D., and Herman, M.A. 2011. Normalization and centering of array-based heterologous genome hybridization based on divergent control probes. BMC Bioinformatics 12, 183.

Gan, X, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, SJ Schultheiss, EJ Osborne, VT Sreedharan, A Kahles, R Bohnert, G Jean, P Derwent, P Kersey, EJ Belfield, NP Harberd, E Kemen, C Toomajian, PX Kover, RM Clark, G Rӓtsch & R Mott. 2011. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477: 419-423; published online 28 August 2011 (doi:10.1038/nature10414).

Hancock, AM, B Brachi, N Faure, MW Horton, LB Jarymowycz, FG Sperone, C Toomajian, F Roux & J Bergelson. 2011. Adaptation to climate across the Arabidopsis thaliana genome. Science 334:83-86. (doi:10.1126/science.1209244).

Kawakami T, Morgan TJ, Nippert JB, Ocheltree TW, Keith R, Dhakal P, Ungerer MC. 2011. Natural selection drives clinal life history patters in the perennial sunflower species, Helianthus maximiliani.Molecular Ecology 20:2318-2328.

Kawakami T, Dhakal P, Katterhenry AN, Heatherington CA, Ungerer MC. 2011. Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons.Genome Biology Evolution 3:156-167

Marshall, J.L., D.L. Huestis, C. Garcia, Y. Hiromasa, S. Wheeler, S. Noh, J.M. Tomich, and D.J. Howard. 2011. Comparative proteomics uncovers the signature of natural selection acting on the ejaculate proteomes of two cricket species isolated by postmating, prezygotic phenotypes.Molecular Biology and Evolution 28:423-435. (KAES contribution #: 10-239-J).

Murugan, M.; Cardona, P. Sotelo; Duraimurugan, P.; Whitfield, A.E.; Schneweis, D.; Starkey, S.; Smith, C.M. 2011. Wheat Curl Mite Resistance: Interactions of Mite Feeding with Wheat Streak Mosaic Virus Infection.Journal of Economic Entomology 104: 1406-1414.

Westphal, M.F., J. Massie, J.M. Bronkema, B. Smith and T.J. Morgan. 2011. Heritable variation in garter snake color patterns between populations in a postglacial landscape. PLoS One 6(9):e24199. doi:10.1371/journal.pone.0024199.

Westphal, M.F., S.R. Morey, J.C. Uyeda, and T.J. Morgan. 2011. Molecular phylogeny of the subfamily Amphistichinae (Teleostei: Embiotocidae) reveals a convergent loss of red pigmentation in two rapidly evolving lineages of sand-dwelling surfperch. Journal of Fish Biology doi:10.1111/j.1095-8649.2011.03011.x.

Whitfield, A.E., Rotenberg, D., Aritua, V., and Hogenhout, S.A. 2011. Analysis of expressed sequence tags from Maize mosaic rhabdovirus-infected gut tissues of Peregrinus maidis reveals the presence of key components of insect innate immunity.Insect Molecular Biology 20:225-242.

Zhen Y, Dhakal P, Ungerer MC. 2011. Fitness benefits and costs of cold acclimation in Arabidopsis thaliana.American Naturalist 178: 44-52