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Ecological Genomics Institute

2012 Publications

Badillo-Vargas, I., Rotenberg, D., Schneweis, D.J., Hiromasa, Y., Tomich, J.M., and Whitfield, A.E. 2012. Proteomic analysis of the first instar larvae of Frankliniella occidentalis, the insect vector of Tomato spotted wilt virus. Journal of Virology 86:8793-8809.

Civetta, A., J.M. Erin-Lopez, R. Kilathinal, and J.L. Marshall. 2012. The Evolution of Sex-related Traits and Genes.International Journal of Evolutionary Biology. Article ID 590769.

Cloyd, R.A., and Whitfield, A.E. 2012. The Western flower thrips and INSV complexGrower Talks 76:62-66.

Fallis, L.C., J.J. Fanara, and T.J. Morgan. 2012. Adaptive thermal plasticity among Drosophila populationsJournal of Evolutionary Biology. 27(3): 557-564.

Fallis, L.C., J.J. Fanara, and T.J. Morgan. 2012. Genetic variation in heat-stress tolerance among South American Drosophila populations.Genetica. Genetica 139(10): 1331-1337.

Garrett, KA, A Jumpponen, C Toomajian & L Gomez-Montano. 2012. Climate change and plant health: Designing research spillover from plant genomics for understanding the role of microbial communities.Canadian Journal of Plant Pathology 34:349-361 (doi:10.1080/07060661.2012.706832).

Horton, MW, AM Hancock, YS Huang, C Toomajian, S Atwell, A Auton, NW Muliyati, A Platt, FG Sperone, BJ Vilhjalmsson, M Nordborg, JO Borevitz & J Bergelson. 2012. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics 44: 212-216; published online 08 January 2012 (doi:10.1038/ng.1042).

Marshall, J.L. and N. DiRienzo. 2012. Noncompetitive gametic isolation between sibling species of cricket: a hypothesized link between within-population incompatibility and reproductive isolation between species.International Journal of Evolutionary Biology. Article ID 593438 (KAES contribution #:13-164-J).

Not, F, Siano, R, Kooistra, WHCF, Simon, N, Vaulot, D, Probert, I, de Clerck, O, et al. 2012. 1 Diversity and Ecology of Eukaryotic Marine PhytoplanktonAdvances in Botanical Research 64, 1-53.

Oppert, B., S.E. Dowd, P. Bouffard, L. Li, A. Conesa, M.D. Lorenzen, M. Toutges, J.L. Marshall, D. Huestis, J. Fabrick, C. Oppert and J.L. Jurat-Fuentes. 2012. Transcriptome profiling of the intoxication response of Tenebrio molitor larvae to Bacillus thuringiensis Cry3Aa protoxin. Plos One 7:334624.

Staton SE, Hartman-Bakken B, Blackman BK, Chapman MA, Kane NC, Tang S, Ungerer MC, Knapp SJ, Rieseberg LH, Burke JM. 2012. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements. Plant Journal 72: 142-153

Umen, JG, Olson, BJSC. 2012. Genomics of volvocine algae. Genomic Insights into the Biology of Algae 64, 185-243.

Wheeler DC, Darby BD, Todd, TC.Herman MA. 2012. Several grassland soil nematodes species are insensitive to RNA-mediated interferenceJournal of Nematology, 44:92-101.

Becklin, K., Hertweck, K., and Jumpponen, A. 2012. Host identity impacts rhizosphere fungal communities associated with three alpine plant species.Microbial Ecology 63: 682-693. DOI: 10.1007/s00248-011-9968-7

Jumpponen, A., Brown, S.P., Trappe, J.M., Cázares, E., Strömmer, R. 2012. Twenty years of research on Lyman Glacier forefront – lessons learned and questions yet unanswered.Fungal Ecology 5: 430-442. DOI: 10.1016/j.funeco.2012.01.002

Nilsson, R.H., Tedersoo, L., Abarenkov, K., Ryberg, M., Kristiansson, E., Hartmann, M., Schoch, C.L., Nylander, J.A.A., Bergsten, J., Porter, T.M., Jumpponen, A., Vaishampayan, P., Ovaskainen, O., Hallenberg, N., Bengtsson, J., Eriksson, M., Larsson, K.E., Larsson, E., Kõljalg, U. 2012. Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences.MycoKeys DOI: 10.3897/mycokeys.4.3606.

Edwin A. Ndum, Jeffrey M. Albert, Gary L. Gadbury. 2012. Individual treatment heterogeneity in a three period two treatment cross-over design. JP Journal of Biostatistics, 8, 1 – 35.

Gary L. Gadbury and David B. Allison. 2012. Inappropriate fiddling with statistical analyses to obtain a desirable p-value: Tests to detect its presence in published literature. PLoS ONE, 7(10): e46363.

Loop, M.S., Wood, A.C., Thomas, A.S., Dhurandhar, E.J., Shikany, J.M., Gadbury, G.L., and Allison, D.B. 2012. Submitted for Your Consideration: Potential Advantages of a Novel Clinical Trial Design and Initial Patient Reaction.Frontiers in Genetics: Pharmacogenetics and Pharmacogenomics, 3:145. doi:10.3389/fgene.2012.00145.

Robert S. Poulson, Gary L. Gadbury, David B. Allison. 2012. Treatment heterogeneity and individual qualitative interaction.American Statistician, 66, 16 – 24.

Bursian, S. J., J. Moore, J. L. Newsted, J. E. Link, S. D. Fitzgerald, N. M. Bello, V. S. Bhat, D. Kay, X. Zhang, S. Wiseman, R. A. Budinsky, J. P. Giesy and M. J. Zwiernik. 2012 Incidence of jaw lesions and activity and gene expression of hepatic P4501A enzyme in mink (Mustela vison) exposed to dietary 2,3,7,8-tetrachlorodibenzo-p-dioxin, 2,3,7,8-tetrachlorodibenzofuran and 2,3,4,7,8-pentachlorodibenzofuran.Environmental Toxicology and Chemistry. 31 (11): 2545-2556

Singer C., N. M. Bello and B. A. Snyder. 2012. Characterizing prevalence and ecological impact of non-native terrestrial isopods (Isopoda: Oniscidea) in tallgrass prairie. Crustaceana 85(12/13): 1499-1511

Bello, N. M., J. P. Steibel and R. J. Tempelman. 2012. Hierarchical Bayesian modeling of heterogeneous cluster and subject level associations between continuous and binary outcomes in dairy production.Biometrical Journal 54(2): 230-248.

Kumari, S., Shridhar, S., Singh, D., Priya, P., Schrick, K., and Yadav, G. 2012. The role of lectins and HD-ZIP transcription factors in isoprenoid based plant stress responses. Proceedings of Indian National ScienceAcademy 78: 671-691. (article featured in cover illustration)

Merzendorfer, H., Kim, H.S., Chaudhari, S.S., Kumari, M., Specht, C.A., Butcher, S., Brown, S.J., Manak, J.R., Beeman, R.W., Kramer, K.J., et al. 2012. Genomic and proteomic studies on the effects of the insect growth regulator diflubenzuron in the model beetle species Tribolium castaneum. Insect Biochemisty and Molecular Biology 42, 264-276. PMID: 22212827.

Miller, SC, Miyata K., Brown, SJ and Tomoyazu. 2012. Dissecting systemic RNA interference in the red flour beetle Tribolium castaneum: parameters affecting the efficiency of RNAi. PLoS ONE 7(10): e47431

Fehlberg, S. D. and C. J. Ferguson. 2012. Intraspecific cytotypic variation and complicatedgenetic structure in the Phlox amabilis-P. woodhousei (Polemoniaceae) complex. American Journal of Botany 99: 865-874. 

Fehlberg, S. D. and C. J. Ferguson. 2012. Intraspecific cytotype variation and conservation: an example from Phlox (Polemoniaceae). Calochortiana 1: 189-195.

Woods, T. M., J. L. Jonas and C. J. Ferguson. 2012. The invasive Lespedeza cuneate attracts more insect pollinators than native congeners in tallgrass prairie with variableimpacts. Biological Invasions 14: 1045-1059.

Worcester, L., M. H. Mayfield and C. J. Ferguson. 2012. Cytotypic variation in Phlox pilosa ssp. pilosa (Polemoniaceae) at the edge of its range in the central United States. Journal of the Botanical Research Institute of Texas 6: 443-451.

Redinbaugh, M.G., Whitfield, A.E., and Ammar, E.D. 2012. Cereal rhabdovirus interactions with vectors. In: Rhabdoviruses: Molecular Taxonomy, Evolution, Genomics, Ecology, Cytopathology and Control, R. Dietzgen and I. Kuzmin, eds. Horizon Scientific Press, London, pp. 147-163. 

Studt, L, C Troncoso, F Gong, P Hedden, C Toomajian, JF Leslie, H-U Humpf, MC Rojas, B Tudzynski. 2012. Segregation of secondary metabolite biosynthesis in hybrids of Fusarium fujikuroi and Fusarium proliferatum.Fungal Genetics and Biology 49: 567-577. (doi:10.1016/j.fgb.2012.05.005). KAES 12-278-J

Gan Jing, Wenqiao Yuan, Loretta Johnson, Donghai Wang , Richard Nelson, Ke Zhang. 2012. Hydrothermal conversion of big bluestem for bio-oil production: The effect of ecotype and planting location.Bioresource Technology 116 (2012) 413–420.

Zhang,Ke  Loretta Johnson, Richard Nelson, Wenqiao Yuan, Zhijian. Pei, and Donghai Wang. 2012. Chemical and elemental composition of big bluestem as affected by ecotype and planting location along the precipitation gradient of the Great Plains. Industrial Crops and Products 40: 210–218.

Yao J., Buschman L. L., Oppert B., Khajuria C. & Zhu K. Y. 2012. Characterization of cDNAs encoding serine proteases and their transcriptional responses to Cry1Ab protoxin in the gut of Ostrinia nubilalis larvae.  PLOS ONE 7(8): e44090. doi:10.1371/journal.pone.0044090.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C. 2012. Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome. BMC Genomics 13:47.

Akhunov E, Chao S, Saintenac C, Kiani S, See D, Brown-Guedira G, Sorrells M, Akhunova A, Dubcovsky J. Cavanagh C, Hayden M. 2012. High-throughput approaches to genome-wide analysis of genetic variation in polyploid wheat. Canadian Journal of Plant Sciences 3:596.

Garrett, K. A. 2012. Information networks for plant disease: Commonalities in human management networks and within-host signaling networks. [Invited] European Journal of Plant Pathology 133:75-88.

Sutrave, S., C. Scoglio, S. A. Isard, J. M. S. Hutchinson, and K. A. Garrett. 2012. Identifying highly connected counties compensates for resource limitations when evaluating national spread of an invasive pathogen.PLoS ONE 7:e37793.